The pathway heatmap is an appealing visualization to clearly shows how the expression of each pathway gene compares to the others. It is generated when you click a pathway or gene set name in the “Gene Set Enrichment” panel at the result page. An example output is shown below The pathway heatmap values are calculated through a series of steps: The fitted model for each gene is evaluated across the range of doses in the uploaded data. The resulting modeled expression values are normalized
Using Heatmaps
Dos and don'ts for a heatmap color scale, by BioTuring Team
Help Online - Tutorials - Create Heatmap with Virtual Matrix and
Make heatmaps in R with pheatmap - Kamil Slowikowski
How to Use a Heatmap to Explore Data
Help Online - Tutorials - Create Heatmap with Virtual Matrix and
Effects of low doses of methylmercury (MeHg) exposure on
Bitesize Bioinformatics: Drawing Heatmaps in R
Heatmaps Are The New Hotness*
A) Heatmap of 15 selected genes based on KEGG pathway enrichment
KEGG Decoder heat map based on Kofamscan results. The heat map
Color Theory: Heat Maps